PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00640_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 298aa    MW: 33491.3 Da    PI: 4.7849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.8e-15118161755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +Er+RR+ri+++++ Lr+++Pk      +K++Ka+iL  A+eY+k+Lq
  GSMUA_Achr3P00640_001 118 VAERKRRQRIRDRLHALRSMVPKI-----TKMDKASILGDAIEYVKELQ 161
                            68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.38111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18114173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12118161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-7133165No hitNo description
CDDcd048732.33E-5223286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MANNNGDPDI TIAHDLRPWF PPQATAASPP TSPWNPFCGP KKGDSFLDAS TDETVAYLNS  60
LLTTADAEPS SQPSAEHDEE EPPKREARRQ RRPGLASGGS EDDEEQRPGK RHHSKNLVAE  120
RKRRQRIRDR LHALRSMVPK ITKMDKASIL GDAIEYVKEL QNQVRDLQDG LEKNEEEDEG  180
NVPVPNGMIN RGKEPMSDED DDEHQQMEPQ VEVKQLTANE LFLMVLCEHR QGGFARLMEA  240
MNALSLEVTN ASVTTSRTVV LNVFRVEKGN NNLVVRAEEV RDMLLETARG REEGQLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391173.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX26e-53AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLM0SAN20.0M0SAN2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-54bHLH family protein